![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
In C2v, however, the functions are distributed into the four representations
of the group and therefore different symmetry representations can be mixed.
The next table lists the distribution of the
functions in C2v and the symmetry of the corresponding orbitals in
In symmetry The tool to restrict possible orbital rotations is the option SUPSym in the RASSCF program. It is important to start with clean orbitals belonging to the actual symmetry, that is, without unwanted mixing.
But the problems with the symmetry are not solved with the SUPSym option only.
Orbitals belonging to different components of a degenerate representation should also be
equivalent. For example: the We need an equivalence table to know the correspondence of the symbols for the functions in MOLCAS to the spherical harmonics (SH):
We begin by performing a SCF calculation and analyzing the resulting orbitals. The employed bond distance is close to the experimental equilibrium bond length for the ground state [241]. Observe in the following SEWARD input that the symmetry generators, planes yz and xz, lead to a C2v representation. In the SCF input we have used the option OCCNumbers which allows specification of occupation numbers other than 0 or 2. It is still the closed shell SCF energy functional which is optimized, so the obtained SCF energy has no physical meaning. However, the computed orbitals are somewhat better for open shell cases as NiH. The energy of the virtual orbitals is set to zero due to the use of the IVO option. The order of the orbitals may change in different computers and versions of the code.
In difficult situations it can be useful to employ the AUFBau option of the SCF program. Including this option, the subsequent classification of the orbitals in the different symmetry representations can be avoided. The program will look for the lowest-energy solution and will provide with a final occupation. This option must be used with caution. It is only expected to work in clear closed-shell situations.
We have only printed the orbitals most relevant to the following discussion.
Starting with symmetry 1 (
The first step is to evaluate the importance of the mixings
for future calculations. Strictly, any kind of mixing should be avoided.
If g functions are used, for instance, new contaminations show up. But,
undoubtedly, not all mixings are going to be equally important. If the
rotations occur among occupied or active orbitals the influence
on the results is going to be larger than if they are high secondary
orbitals. NiH is one of these cases. The ground state of the molecule
is
To use the supersymmetry (SUPSym) option we must
start with proper orbitals. In this case the Once the orbitals are properly symmetrized we can perform CASSCF calculations on different electronic states. Deriving the types of the molecular electronic states resulting from the electron configurations is not simple in many cases. In general, for a given electronic configuration several electronic states of the molecule will result. Wigner and Witmer derived rules for determining what types of molecular states result from given states of the separated atoms. In chapter VI of reference [243] it is possible to find the tables of the resulting electronic states once the different couplings and the Pauli principle have been applied.
In the present CASSCF calculation we have chosen the active
space (3d, 4d,
We continue by computing the
The
The corresponding input for symmetry
In the RASSCF inputs the CLEAnup option will take the initial orbitals
(SCF here)
and will place zeroes in all the coefficients of orbitals 6, 10, 13, and 18 in symmetry 1,
except in coefficients 13, 14, 15, and 17. Likewise all coefficients 13, 14, 15, and 17
of the remaining Orbitals can change order during the calculation. MOLCAS incorporates a procedure to check the nature of the orbitals in each iteration. Therefore the right behavior of the SUPSym option is guaranteed during the calculation. The procedure can have problems if the initial orbitals are not symmetrized properly. Therefore, the output with the final results should be checked to compare the final order of the orbitals and the final labeling of the SUPSym matrix.
The AVERage option would average the density matrices of symmetries 2 and 3,
corresponding to the
The output for the calculation on symmetry 4 (
The state is mainly (weight 96%) described by a single configuration
(configuration number 15834) which placed one electron on the first active
orbital of symmetry 4 (
The calculation of the first root of symmetry 1 (
We obtain the same energy as in the previous calculation. Here the dominant
configuration places one electron on the first active orbital of symmetry 1 ( The consequences of not using the SUPSym option are not extremely severe in the present example. If you perform a calculation without the option, the obtained energy is:
As it is a broken symmetry solution the energy is lower than in the other case. This is a typical behavior. If we were using an exact wave function it would have the right symmetry properties, but approximated wave functions do not necessarily fulfill this condition. So, more flexibility leads to lower energy solutions which have broken the orbital symmetry.
If in addition to the
Of course the SUPSym option must be maintained. The use of CIROot indicates that we are computing the second root of that symmetry. The obtained result:
As we have used two as the dimension of the CI matrix employed in the CI Davidson
procedure we obtain the wave function of two roots, although the optimized
root is the second. Root 1 places one electron in the first active orbital
of symmetry one, which is a 3d2+ (3dx2-y2) It is important to remember that the active orbitals are not ordered at all within the active space. Therefore, their order might vary from calculation to calculation and, in addition, no conclusions about the orbital energy, occupation or any other information can be obtained from the order of the active orbitals.
We can compute also the lowest
For NiH it turns out to be non trivial to compute the
The calculation, however, converges in an straightforward way if none of those tools are used:
The
Therefore what we have is a symmetry broken solution. To obtain a solution which
is not of broken nature the
It can take some successive steps to obtain a converged calculation using the
CLEAnup, SUPSym, and AVERage options. The calculation
with a single root did not converge clearly. We obtained, however, a converged
result for the lowest
The energy of the different states (only the first one shown above) is
printed on the top of their configuration list. The converged energy is
simply an average energy.
The occupation numbers obtained in the section of the RASSCF output printed
above are the occupation numbers of the natural orbitals of the corresponding
root. They differ from the occupation numbers printed in the
molecular orbital section where we have pseudonatural molecular orbitals and
average occupation numbers. On top of each of the valence The results obtained are only at the CASSCF level. Additional effects have to be considered and included. The most important of them is the dynamical correlation effect which can be added by computing, for instance, the CASPT2 energies. The reader can find a detailed explanation of the different approaches in ref. [241], and a careful discussion of their consequences and solutions in ref. [244].
We are going, however, to point out some details. In the first place the basis set
must include up to g functions for the transition metal atom and up to d
functions for the hydrogen. Relativistic effects must be taken into account,
at least in a simple way as a first order correction. The keyword RELInt
must be then included in the SEWARD input to compute the mass-velocity and
one-electron Darwin contact term integrals and obtain a first-order correction
to the energy with respect to relativistic effects at the CASSCF level in the RASSCF output.
Scalar relativistic effects can be also included according the Douglas-Kroll
or the Barysz-Sadlej-Snijders transformations, as it will be explained in
section The CASPT2 input needed to compute the second-order correction to the energy will include the number of the CASSCF root to compute. For instance, for the first root of each symmetry:
The number of frozen orbitals taken by CASPT2 will be that specified in the RASSCF input except if this is changed in the CASPT2 input. In the perturbative step we have frozen all the occupied orbitals except the active ones. This is motivated by the desire to include exclusively the dynamical correlation related to the valence electrons. In this way we neglect correlation between core electrons, named core-core correlation, and between core and valence electrons, named core-valence correlation. This is not because the calculation is smaller but because of the inclusion of those type of correlation in a calculation designed to treat valence correlation is an inadequate approach. Core-core and core-valence correlation requires additional basis functions of the same spatial extent as the occupied orbitals being correlated, but with additional radial and angular nodes. Since the spatial extent of the core molecular orbitals is small, the exponents of these correlating functions must be much larger than those of the valence optimized basis sets. The consequence is that we must avoid the inclusion of the core electrons in the treatment in the first step. Afterwards, the amount of correlation introduced by the core electrons can be estimated in separated calculations for the different states and those effects added to the results with the valence electrons. Core-valence correlation effects of the 3s and 3p nickel shells can be studied by increasing the basis set flexibility by uncontracting the basis set in the appropriate region. There are different possibilities. Here we show the increase of the basis set by four s, four p, and four d functions. f functions contribute less to the description of the 3s and 3p shells and can be excluded. The uncontracted exponents should correspond to the region where the 3s and 3p shells present their density maximum. Therefore, first we compute the absolute maxima of the radial distribution of the involved orbitals, then we determine the primitive gaussian functions which have their maxima in the same region as the orbitals and therefore which exponents should be uncontracted. The final basis set will be the valence basis set used before plus the new added functions. In the present example the SEWARD input can be:
We have used a special format to include the additional functions. We include the additional 4s4p4d functions for the nickel atom. The additional basis set input must use a dummy label (Nix here), the same coordinates of the original atom, and specify a CHARge equal to zero, whether in an Inline basis set input as here or by specifically using keyword CHARge. It is not necessary to include the basis set with the Inline format. A library can be created for this purpose. In this case the label for the additional functions could be:
and a proper link to AUXLIB should be included in the script (or in the input if one uses AUTO). Now the CASPT2 is going to be different to include also the correlation related to the 3s,3p shell of the nickel atom. Therefore, we only freeze the 1s,2s,2p shells:
A final effect one should study is the basis set superposition error (BSSE). In many cases it is a minor effect but it is an everpresent phenomenon which should be investigated when high accuracy is required, especially in determining bond energies, and not only in cases with weakly interacting systems, as is frequently believed. The most common approach to estimate this effect is the counterpoise correction: the separated fragment energies are computed in the total basis set of the system. For a discussion of this issue see Refs. [244,245]. In the present example we would compute the energy of the isolated nickel atom using a SEWARD input including the full nickel basis set plus the hydrogen basis set in the hydrogen position but with the charge set to zero. And then the opposite should be done to compute the energy of isolated hydrogen. The BSSE depends on the separation of the fragments and must be estimated at any computed geometry. For instance, the SEWARD input necessary to compute the isolated hydrogen atom at a given distance from the ghost nickel basis set including core uncontracted functions is:
The results obtained at the CASPT2 level are close to those obtained by MRCI+Q and ACPF treatments but more accurate. They match well with experiment. The difference is that all the configuration functions (CSFs) of the active space can be included in CASPT2 in the zeroth-order references for the second-order perturbation calculation [241], while the other methods have to restrict the number of configurations. Calculations of linear molecules become more and more complicated when the number of unpaired electrons increases. In the following sections we will discuss the more complicated situation occurring in the Ni2 molecule.
|
Symmetry | Spherical harmonics | |||
![]() |
s | dz2 | ||
![]() |
pz | fz3 | ||
![]() |
dxz | dyz | ||
![]() |
px | py | fx(z2-y2) | fy(z2-x2) |
![]() |
dx2-y2 | dxy | ||
![]() |
fxyz | fz(x2-y2) | ||
![]() |
fx3 | fy3 | ||
aFunctions placed on the symmetry center. |
Table classifies
the functions and orbitals into the symmetry representations of the D2h symmetry. Note that in table
subindex b stands for bonding combination and
a for antibonding combination.
Symm.b | Spherical harmonics (orbitals in ![]() |
|||||
![]() |
sb (![]() |
pzb (![]() |
dz2b (![]() |
dx2-y2b (![]() |
fz3b (![]() |
fz(x2-y2)b (![]() |
![]() |
pxb (![]() |
dxzb (![]() |
fx(z2-y2)b (![]() |
fx3b (![]() |
||
![]() |
pyb (![]() |
dyzb (![]() |
fy(z2-x2)b (![]() |
fy3b (![]() |
||
![]() |
dxyb (![]() |
fxyzb (![]() |
||||
![]() |
sa (![]() |
pza (![]() |
dz2a (![]() |
dx2-y2a (![]() |
fz3a (![]() |
fz(x2-y2)a (![]() |
![]() |
pya (![]() |
dyza (![]() |
fy(z2-x2)a (![]() |
fy3a (![]() |
||
![]() |
pxa (![]() |
dxza (![]() |
fx(z2-y2)a (![]() |
fx3a (![]() |
||
![]() |
dxya (![]() |
fxyza (![]() |
||||
aSubscripts a and b refer to the bonding and antibonding combination of the AO's, respectively. | ||||||
bIn parenthesis the number of the symmetry in MOLCAS. Note that the number and order of the | ||||||
symmetries depend on the generators and the orientation of the molecule. |
The order of the symmetries, and therefore the number they have in MOLCAS, depends
on the generators used in the SEWARD input. This must be carefully checked
at the beginning of any calculation. In addition, the orientation of the molecule on the
cartesian axis can change the labels of the symmetries. In Table for
instance we have used the order and numbering of a calculation performed with the
three symmetry planes of the D2h point group (X Y Z in the SEWARD input)
and the z axis as the intermolecular axis (that is, x and y are equivalent in D2h).
Any change in the orientation of the molecule will affect the labels of the orbitals
and states. In this case the
orbitals will belong to the
,
,
, and
symmetries. For instance, with x as the intermolecular axis
and
will
be replaced by
and
, respectively, and finally with y as the intermolecular axis
,
,
, and
would be the
orbitals.
It is important to remember that MOLCAS works with symmetry adapted basis functions. Only the symmetry independent atoms are required in the SEWARD input. The remaining ones will be generated by the symmetry operators. This is also the case for the molecular orbitals. MOLCAS will only print the coefficients of the symmetry adapted basis functions.
The necessary information to obtain the complete set of orbitals
is contained in the SEWARD output. Consider the case of the symmetry:
**************************************************
******** Symmetry adapted Basis Functions ********
**************************************************
~
Irreducible representation : ag
Basis function(s) of irrep:
~
Basis Label Type Center Phase Center Phase
1 C 1s0 1 1 2 1
2 C 1s0 1 1 2 1
3 C 1s0 1 1 2 1
4 C 1s0 1 1 2 1
5 C 2pz 1 1 2 -1
6 C 2pz 1 1 2 -1
7 C 2pz 1 1 2 -1
8 C 3d0 1 1 2 1
9 C 3d0 1 1 2 1
10 C 3d2+ 1 1 2 1
11 C 3d2+ 1 1 2 1
12 C 4f0 1 1 2 -1
13 C 4f2+ 1 1 2 -1
The previous output indicates that symmetry adapted basis function 1,
belonging to the representation, is formed by
the symmetric combination of a s type function centered on atom C and
another s type function centered on the redundant center 2, the second
carbon atom. Combination s+s constitutes a bonding
-type
orbital. For the pz function however the combination must be
antisymmetric. It is the only way to make the pz orbitals overlap
and form a bonding orbital of
symmetry. Similar combinations are obtained for the
remaining basis sets of the
and other symmetries.
The molecular orbitals will be combinations of these symmetry adapted
functions. Consider the orbitals:
SCF orbitals
~
Molecular orbitals for symmetry species 1
~
ORBITAL 1 2 3 4 5 6
ENERGY -11.3932 -1.0151 -.1138 .1546 .2278 .2869
OCC. NO. 2.0000 2.0000 .0098 .0000 .0000 .0000
~
1 C 1s0 1.4139 -.0666 -.0696 .2599 .0626 .0000
2 C 1s0 .0003 1.1076 -.6517 1.0224 .4459 .0000
3 C 1s0 .0002 -.0880 -.2817 .9514 .0664 .0000
4 C 1s0 .0000 -.0135 -.0655 .3448 -.0388 .0000
5 C 2pz -.0006 -.2581 -1.2543 1.1836 .8186 .0000
6 C 2pz .0000 .1345 -.0257 2.5126 1.8556 .0000
7 C 2pz .0005 -.0192 -.0240 .7025 .6639 .0000
8 C 3d0 .0003 .0220 -.0005 -.9719 .2430 .0000
9 C 3d0 -.0001 -.0382 -.0323 -.8577 .2345 .0000
10 C 3d2+ .0000 .0000 .0000 .0000 .0000 -.7849
11 C 3d2+ .0000 .0000 .0000 .0000 .0000 -.7428
12 C 4f0 -.0002 -.0103 -.0165 .0743 .0081 .0000
13 C 4f2+ .0000 .0000 .0000 .0000 .0000 -.0181
In MOLCAS outputs only 13 coefficients for orbital are going to be printed because they are the coefficients of the symmetry adapted basis functions. If the orbitals were not composed by symmetry adapted basis functions they would have, in this case, 26 coefficients, two for type of function (following the scheme observed above in the SEWARD output), symmetrically combined the s and d functions and antisymmetrically combined the p and f functions.
To compute electronic states using the D2h symmetry we need
to go to the symmetry tables and determine how the species
of the linear molecules are resolved into those of lower symmetry
(this depends also on the orientation of the molecule [243]).
Table
lists the case of a
linear molecule with z as
the intermolecular axis.
State symmetry ![]() |
State symmetry D2h | |
![]() |
Ag | |
![]() |
B1u | |
![]() |
B1g | |
![]() |
Au | |
![]() |
B2g + B3g | |
![]() |
B2u + B3u | |
![]() |
Ag + B1g | |
![]() |
Au + B1u | |
![]() |
B2g + B3g | |
![]() |
B2u + B3u | |
![]() |
Ag + B1g | |
![]() |
Au + B1u |
To compute the ground state of C2, a state, we will
compute a singlet state of symmetry Ag (1 in this context).
The input files for a CASSCF calculation on the C2 ground state
will be:
&SEWARD &END
Title
C2
Symmetry
X Y Z
Basis set
C.ANO-L...4s3p2d1f.
C .00000000 .00000000 1.4
End of basis
End of input
&SCF &END
Title
C2
ITERATIONS
40
Occupied
2 1 1 0 2 0 0 0
End of input
&RASSCF &END
Title
C2
Nactel
4 0 0
Spin
1
Symmetry
1
Inactive
2 0 0 0 2 0 0 0
Ras2
1 1 1 0 1 1 1 0
*Average
*2 2 3 6 7
Supsymmetry
1
3 6 9 11
1
1 6
1
1 6
0
1
3 5 8 12
1
1 6
1
1 6
0
Iter
50,25
Lumorb
End of input
In this case the SCF orbitals are already clean symmetry adapted orbitals
(within the printed accuracy).
We can then directly use the SUPSym option. In symmetries
and
we restrict the rotations among the
and
the
orbitals, and in symmetries
,
,
, and
the rotations among
and
orbitals. Additionally,
symmetries
and
and symmetries
and
are averaged, respectively, by using
the AVERage option. They belong to the
and
representations in
, respectively.
A detailed explanation on different CASSCF calculations on the C2 molecule and their states can be found elsewhere [85]. Instead we include here an example of how to combine the use of UNIX shell script commands with MOLCAS as a powerful tool.
The following example computes the transition dipole moment for the transition
from the state to the
state in the C2
molecule. This transition is known as the Phillips bands [243].
This is not a serious attempt to compute this property accurately, but serves
as an example of how to set up an automatic calculation.
The potential curves are computed using CASSCF wavefunctions
along with the transition dipole moment.
Starting orbitals are generated by computing a CI wavefunction once and using the natural orbitals. We loop over a set of distances, compute the CASSCF wave functions for both states and use RASSI to compute the TDMs. Several UNIX commands are used to manipulate input and output files, such as grep, sed, and the awk language. For instance, an explicit 'sed' is used to insert the geometry into the seward input; the final CASSCF energy is extracted with an explicit 'grep', and the TDM is extracted from the RASSI output using an awk script. We are not going to include the awk scripts here. Other tools can be used to obtain and collect the data.
In the first script, when the loop over geometries is done, four files are available:
geom.list (contains the distances), tdm.list (contains the TDMs),
e1.list (contains the energy for the state), and
e2.list (contains the energy for the
state). In the second script the vibrational
wave functions for the two states and the vibrationally averaged TDMs
are now computed using the VIBROT program. We will retain the RASSCF outputs
in the scratch directory to check the wave function. It is always dangerous
to assume that the wave functions will be correct in a CASSCF calculation.
Different problems such as root flippings or incorrect orbitals rotating into the
active space are not uncommon. Also, it is always necessary to control that the
CASSCF calculation has converged. The first script (Korn shell) is:
#!/bin/ksh
#
# perform some initializations
#
export Project='C2'
export WorkDir=/temp/$LOGNAME/$Project
export Home=/u/$LOGNAME/$Project
echo "No log" > current.log
trap 'cat current.log ; exit 1' ERR
mkdir $WorkDir
cd $WorkDir
#
# Loop over the geometries and generate input for vibrot
#
list="1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 5.0 10.0"
scf='yes'
print "Sigma" > e1.list
print "Pi" > e2.list
for geom in $list
do
#--- run seward
print "Dist $geom" >> geom.list
sed -e "s/#/$geom/" $Home/$Project.seward.input > seward.input
molcas seward.input > current.log
#--- optionally run scf, motra, guga and mrci to obtain good starting orbitals
if [ "$scf" = 'yes' ]
then
scf='no'
molcas $Home/$Project.scf.input > current.log
molcas $Home/$Project.motra.input > current.log
molcas $Home/$Project.guga.input > current.log
molcas $Home/$Project.mrci.input > current.log
cp $Project.CiOrb $Project.RasOrb1
cp $Project.CiOrb $Project.RasOrb2
fi
#--- rasscf wavefunction for 1Sg+
ln -fs $Project.Job001 JOBIPH
ln -fs $Project.RasOrb1 INPORB
molcas $Home/$Project.rasscf1.input > current.log
cat current.log >> rasscf1.log
cat current.log | grep -i 'average ci' >> e1.list
cp $Project.RasOrb $Project.RasOrb1
rm -f JOBIPH INPORB
#--- rasscf wavefunction for 1Pu
ln -fs $Project.Job002 JOBIPH
ln -fs $Project.RasOrb2 INPORB
molcas $Home/$Project.rasscf2.input > current.log
cat current.log >> rasscf2.log
cat current.log | grep -i 'average ci' >> e2.list
cp $Project.RasOrb $Project.RasOrb2
rm -f JOBIPH INPORB
#--- rassi to obtain transition
ln -fs $Project.Job001 JOB001
ln -fs $Project.Job002 JOB002
molcas $Home/$Project.rassi.input > current.log
awk -f $Home/tdm.awk current.log >> tdm.list
rm -f JOB001 JOB002
#---
done
#
# Finished so clean up the files.
#
print "Calculation finished" >&2
cd -
rm $WorkDir/molcas.temp*
#rm -r $WorkDir
exit 0
In a second script we will compute the vibrational wave functions
#!/bin/ksh
#
# perform some initializations
#
export Project='C2'
export WorkDir=/temp/$LOGNAME/$Project
export Home=/u/$LOGNAME/$Project
echo "No log" > current.log
trap 'cat current.log ; exit 1' ERR
mkdir $WorkDir
cd $WorkDir
#
# Build vibrot input
#
cp e1.list $Home
cp e2.list $Home
cp geom.list $Home
cp tdm.list $Home
#---
cat e1.list geom.list | awk -f $Home/wfn.awk > vibrot1.input
cat e2.list geom.list | awk -f $Home/wfn.awk > vibrot2.input
cat tdm.list geom.list | awk -f $Home/tmc.awk > vibrot3.input
#---
ln -fs $Project.VibWvs1 VIBWVS
molcas vibrot1.input > current.log
cat current.log
rm -f VIBWVS
#---
ln -fs $Project.VibWvs2 VIBWVS
molcas vibrot2.input > current.log
cat current.log
rm -f VIBWVS
#---
ln -fs $Project.VibWvs1 VIBWVS1
ln -fs $Project.VibWvs2 VIBWVS2
molcas vibrot3.input > current.log
cat current.log
rm -f VIBWVS1 VIBWVS2
#
# Finished so clean up the files.
#
print "Calculation finished" >&2
cd -
rm $WorkDir/molcas.temp*
#rm -r $WorkDir
exit 0
The input for the first part of the calculations include the SEWARD, SCF, MOTRA, GUGA, and MRCI inputs:
&SEWARD &END
Title
C2
Pkthre
1.0D-11
Symmetry
X Y Z
Basis set
C.ANO-S...3s2p.
C .00000000 .00000000 #
End of basis
End of input
&SCF &END
Title
C2
ITERATIONS
40
Occupied
2 1 1 0 2 0 0 0
End of input
&MOTRA &END
Title
C2 molecule
Frozen
1 0 0 0 1 0 0 0
LumOrb
End of input
&GUGA &END
Title
C2 molecule
Electrons
8
Spin
1
Inactive
1 1 1 0 1 0 0 0
Active
0 0 0 0 0 0 0 0
CiAll
1
End of Input
&MRCI &END
Title
C2 molecule
SDCI
End of input
We are going to use a small ANO [3s2p] basis set because our purpose it is not to obtain an extreme accuracy. In the SEWARD input the sign '#' will be replaced by the right distance using the 'sed' command. In the MOTRA input we have frozen the two core orbitals in the molecule, which will be recognized by the MRCI program. The GUGA input defines the reference space of configurations for the subsequent MRCI or ACPF calculation. In this case the valence orbitals are doubly occupied and there is only one reference configuration (they are included as inactive). We thus use one single configuration to perform the SDCI calculation and obtain the initial set of orbitals for the CASSCF calculation.
The lowest state in C2 is the result of the
electronic configuration [core](2
)2 (2
)2
(1
)4. Only one electronic state is obtained from this
configuration. The configuration (1
)3 (3
)1
is close in energy and generates two possibilities,
one
and one
state. The former is the lowest
state of the Swan bands, and was thought to be the ground state of
the molecule. Transitions to the
state are known as the
Phillips band and this is the state we are going to compute.
We have the possibility to compute the state in symmetry
or
( MOLCAS symmetry groups 2 and 3, respectively ) in the D2h
group, because both represent the degenerate
symmetry in
.
The RASSCF input file to compute the two states are:
&RASSCF &END
Title
C2 1Sigmag+ state.
Nactel
4 0 0
Spin
1
Symmetry
1
Inactive
2 0 0 0 2 0 0 0
Ras2
1 1 1 0 1 1 1 0
*Average
*2 2 3 6 7
OutOrbitals
Natural
1
Iter
50,25
Lumorb
End of input
&RASSCF &END
Title
C2 1Piu state.
Nactel
4 0 0
Spin
1
Symmetry
2
Inactive
2 0 0 0 2 0 0 0
Ras2
1 1 1 0 1 1 1 0
Average
2 2 3 6 7
OutOrbitals
Natural
1
Iter
50,25
Lumorb
End of input
We can skip the SUPSym option because our basis set
contains only s,p functions and no undesired rotations can
happen. Symmetries and
on one hand and
and
on
the other are averaged. Notice that to obtain natural orbitals we have
used keyword OUTOrbitals instead of the old RASREAD
program. In addition, we need the RASSI input:
&RASSI &END
NrOfJobiphs
2 1 1
1
1
End of input
The VIBROT inputs to compute the vibrational-rotational analysis and spectroscopic constants of the state should be:
&VIBROT &END
RoVibrational spectrum
Title
Vib-Rot spectrum for C2. 1Sigmag+
Atoms
0 C 0 C
Grid
400
Range
2.0 10.0
Vibrations
3
Rotations
0 4
Orbital
0
Potential
2.2 -75.42310136
...
End of input
Under the keyword POTEntial the bond distance and
potential energy (both in au) of the corresponding state
must be included. In this case we are going to compute three
vibrational quanta and four rotational quantum numbers.
For the state, the keyword ORBItal must be
set to one, corresponding to the orbital angular momentum
of the computed state. VIBROT fits the potential curve to
an analytical curve using splines. The ro-vibrational
Schrödinger equation is then solved numerically (using
Numerov's method) for one vibrational state at a time and
for the specified number of rotational quantum numbers.
File VIBWVS will contain the corresponding wave
function for further use.
Just to give some of the results obtained, the spectroscopic
constants for the state were:
Re(a) 1.4461
De(ev) 3.1088
D0(ev) 3.0305
we(cm-1) .126981E+04
wexe(cm-1) -.130944E+02
weye(cm-1) -.105159E+01
Be(cm-1) .134383E+01
Alphae(cm-1) .172923E-01
Gammae(cm-1) .102756E-02
Dele(cm-1) .583528E-05
Betae(cm-1) .474317E-06
and for the state:
Re(a) 1.3683
De(ev) 2.6829
D0(ev) 2.5980
we(cm-1) .137586E+04
wexe(cm-1) -.144287E+02
weye(cm-1) .292996E+01
Be(cm-1) .149777E+01
Alphae(cm-1) .328764E-01
Gammae(cm-1) .186996E-02
Dele(cm-1) .687090E-05
Betae(cm-1) -.259311E-06
To compute vibrationally averaged TDMs the VIBROT input must be:
&VIBROT &END
Transition moments
Observable
Transition dipole moment
2.2 0.412805
...
End of input
Keyword OBSErvable indicates the start of input
for radial functions of observables other than the energy.
In the present case the vibrational-rotational matrix elements
of the transition dipole moment function will be generated.
The values of the bond distance and the TDM at each distance
must be then included in the input. VIBROT also requires
the VIBWVS1 and VIBWVS2 files
containing the vibrational wave functions of the involved electronic states.
The results obtained contain matrix elements, transition
moments over vibrational wave functions, and the lifetimes of the
transition among all the computed vibrational-rotational states.
The radiative lifetime of a vibrational level depends on the
sum of the transition probabilities to all lower vibrational
levels in all lower electronic states. If rotational effects are
neglected, the lifetime () can be written as
![]() |
(10.1) |
where v' and v'' are the vibrational levels of the lower and upper electronic state and Av'v'' is the Einstein A coefficient (ns-1) computed as
![]() |
(10.2) |
is the energy difference (au) and TDMv'v''
the transition dipole moment (au) of the transition.
For instance, for rotational states zero of the state
and one of the
state:
Rotational quantum number for state 1: 0, for state 2: 1
--------------------------------------------------------------------------------
~
Overlap matrix for vibrational wave functions for state number 1
1 1 .307535 2 1 .000000 2 2 .425936 3 1 .000000 3 2 .000000 3 3 .485199
~
Overlap matrix for vibrational wave functions for state number 2
1 1 .279631 2 1 .000000 2 2 .377566 3 1 .000000 3 2 .000000 3 3 .429572
~
Overlap matrix for state 1 and state 2 functions
-.731192 -.617781 -.280533
.547717 -.304345 -.650599
-.342048 .502089 -.048727
~
Transition moments over vibrational wave functions (atomic units)
-.286286 -.236123 -.085294
.218633 -.096088 -.240856
-.125949 .183429 .005284
~
Energy differences for vibrational wave functions(atomic units)
1 1 .015897 2 1 .010246 2 2 .016427 3 1 .004758 3 2 .010939 3 3 .017108
~
Contributions to inverse lifetimes (ns-1)
No degeneracy factor is included in these values.
1 1 .000007 2 1 .000001 2 2 .000001 3 1 .000000 3 2 .000001 3 3 .000000
~
Lifetimes (in nano seconds)
v tau
1 122090.44
2 68160.26
3 56017.08
Probably the most important caution when using the VIBROT program in diatomic molecules is that the number of vibrational states to compute and the accuracy obtained depends strongly on the computed surface. In the present case we compute all the curves to the dissociation limit. In other cases, the program will complain if we try to compute states which lie at energies above those obtained in the calculation of the curve.
This section is a brief comment on a complex situation in a diatomic molecule such as Ni2. Our purpose is to compute the ground state of this molecule. An explanation of how to calculate it accurately can be found in ref. [241]. However we will concentrate on computing the electronic states at the CASSCF level.
The nickel atom has two close low-lying configurations 3d84s2 and
3d94s1. The combination of two neutral Ni atoms leads to a
Ni2 dimer whose ground state has been somewhat controversial.
For our purposes we commence with the assumption that it is
one of the states derived
from 3d94s1 Ni atoms, with a single bond between the 4s orbitals,
little 3d involvement, and the holes localized in the orbitals.
Therefore, we compute the states resulting from two
holes on
orbitals:
states.
We shall not go through the procedure leading to the different electronic
states that can arise from these electronic configurations, but refer to
the Herzberg book on diatomic molecules [243] for details. In
we have three possible configurations with two holes, since the
orbitals can be either gerade (g) or ungerade (u):
(
)-2, (
)-1(
)-1, or (
)-2.
The latter situation corresponds to nonequivalent electrons while the other
two to equivalent electrons.
Carrying through the analysis we obtain the following electronic states:
()-2 :
,
,
()-2 :
,
,
()-1(
)-1:
,
,
,
,
,
In all there are thus 12 different electronic states.
Next, we need to classify these electronic states in the lower symmetry
D2h, in which MOLCAS works. This is done in Table , which
relates the symmetry in
to that of D2h. Since we have only
,
, and
states here, the D2h symmetries
will be only Ag, Au, B1g, and B1u. The table above can
now be rewritten in D2h:
()-2 : (
+
),
,
()-2 : (
+
),
,
()-1(
)-1: (
+
), (
+
),
,
,
,
or, if we rearrange the table after the D2h symmetries:
:
(
)-2,
(
)-2,
(
)-2,
(
)-2
:
(
)-1(
)-1,
(
)-1(
)-1
:
(
)-2,
(
)-2
:
(
)-1(
)-1,
(
)-1(
)-1
:
(
)-1(
)-1,
(
)-1(
)-1
:
(
)-2,
(
)-2
:
(
)-1(
)-1,
(
)-1(
)-1
It is not necessary to compute all the states because some of
them (the states) have degenerate components. It is both
possible to make single state calculations looking for the lowest
energy state of each symmetry or state-average calculations in each of
the symmetries. The identification of the
states can be
somewhat difficult. For instance, once we have computed one
state it can be a
or a
state.
In this case the simplest solution is to compare the obtained
energy to that of the
degenerate component in
B1g symmetry, which must be equal to the energy of the
state computed in Ag symmetry. Other situations
can be more complicated and require a detailed analysis of the
wave function.
It is important to have clean d-orbitals and the SUPSym
keyword may be needed to separate and
(and
if g-type functions are used in the basis set)
orbitals in symmetry 1 (Ag). The AVERage keyword
is not needed here because the
and
orbitals have
the same occupation for
and
states.
Finally, when states of different multiplicities are close in
energy, the spin-orbit coupling which mix the different states
should be included. The CASPT2 study of the Ni2 molecule
in reference [241], after considering all the mentioned
effects determined that the ground
state of the molecule is a 0g+ state, a mixture of the
and
electronic states.
For a review of the spin-orbit coupling and other important
coupling effects see reference [246].
There are a large number of symmetry point groups in which MOLCAS cannot directly work. Although unusual in organic chemistry, some of them can be easily found in inorganic compounds. Systems belonging for instance to three-fold groups such as C3v, D3h, or D6h, or to groups such Oh or D4h must be computed using lower symmetry point groups. The consequence is, as in linear molecules, that orbitals and states belonging to different representations in the actual groups, belong to the same representation in the lower symmetry case, and vice versa. In the RASSCF program it is possible to prevent the orbital and configurational mixing caused by the first situation. The CLEAnup and SUPSymmetry keywords can be used in a careful, and somewhat tedious, way. The right symmetry behaviour of the RASSCF wave function is then assured. It is sometimes not a trivial task to identify the symmetry of the orbitals in the higher symmetry representation and which coefficients must vanish. In many situations the ground state wave function keeps the right symmetry (at least within the printing accuracy) and helps to identify the orbitals and coefficients. It is more frequent that the mixing happens for excited states.
The reverse situation, that is, that orbitals (normally degenerated) which belong to the same symmetry representation in the higher symmetry groups belong to different representations in the lower symmetry groups cannot be solved by the present implementation of the RASSCF program. The AVERage keyword, which performs this task in the linear molecules, is not prepared to do the same in non-linear systems. Provided that the symmetry problems mentioned in the previous paragraph are treated in the proper way and the trial orbitals have the right symmetry, the RASSCF code behaves properly.
There is a important final precaution concerning the high symmetry systems:
the geometry of the molecule must be of the right symmetry. Any deviation
will cause severe mixings. Figure contains the
SEWARD input for the magnesium porphirin molecule. This is
a D4h system which must be computed D2h in MOLCAS.
For instance, the x and y coordinates of atoms C1 and C5 are interchanged with equal values in D4h symmetry. Both atoms must appear in the SEWARD input because they are not independent by symmetry in the D2h symmetry in which MOLCAS is going to work. Any deviation of the values, for instance to put the y coordinate to 0.681879 Å in C1 and the x to 0.681816 Å in C5 and similar deviations for the other coordinates, will lead to severe symmetry mixtures. This must be taken into account when geometry data are obtained from other program outputs or data bases.
![]() |
The situation can be more complex for some three-fold point groups such as D3h or C3v. In these cases it is not possible to input in the exact cartesian geometry, which depends on trigonometric relations and relies on the numerical precision of the coordinates entry. It is necessary then to use in the SEWARD input as much precision as possible and check on the distance matrix of the SEWARD output if the symmetry of the system has been kept at least within the output printing criteria.